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Welcome to the Neuroimaging and Machine Learning for Biomedicine coursebook

Introduction

Links
Intro to shell
How to work with Python
Intro to ML
Pytorch fundamentals
Intro to computer vision

Seminar 1. Working with EEG

Seminar 1. EEG analysis

Seminars 2-3. Working with MRI

Preparation to Seminar 2
Seminar 2.1. MRI data analysis, databases and tools
Transformations
FREESURFER
Seminar 3.1. MRI classification with 3D CNN
Seminar 3.2. MRI segmentation with 3D U-net

Seminar 4-6. Working with fMRI

Preparation to Seminar 4-5
Seminar 6. Analyze task-based fMRI for motor and emotion task

Seminar 7. Interpretation

Seminar 7. Interpretation of 3D CNNs for Brain MRI Data Classification

Repository
Open issue

Index

By Nadezhda Alsahanova

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